Bioinformatics Class

Class work for bioinformatics class BGGN 213 at UC San Diego

Class Content

• Class 04: Bioinformatics data analysis with R
• Class 05: Data exploration and visualization in R
• Class 06: Why, when and how of writing your own R functions
• Class 07: Introduction to machine learning for Bioinformatics 1
• Class 08: Unsupervised learning mini-project
• Class 09: Structural Bioinformatics (Focus on new AlphaFold2)
• Class 10: Halloween Candy Mini-Project
• Class 11: Structure prediction with AlphaFold2 (Structural Bioinformatics pt2.)
• Class 12: Transcriptomics and the analysis of RNA-Seq data
• Class 13: RNA-Seq analysis mini-project
• Class 15: Essential UNIX for bioinformatics
• Class 16: Analyzing sequencing data in the cloud
• Class 17: Genome informatics
• Class 19: Mini Project: Investigating Pertussis Resurgence